Sliding Window Haplotype Analysis

Genetic Association Analysis Of Secondary Traits Of ...
Family-based association tests, both for single-marker and sliding-window haplotype analyses, were performed by using FBAT/HBAT, Genetic Association Analysis of Secondary Traits of Hypertension and a Functional Candidate Gene in the HyperGEN Study Author: sketkar ... Fetch Doc

Genetic Association With Rheumatoid Arthritis—Genetic ...
Haplotype analysis of the candidate regions and studied the effect of region length in LDU and SNP rather than using a traditional sliding window or other similar approach. Specifically, markers close to each other are added sequentially; markers are ... Read More

Variations In Adiponectin Receptor Genes And Susceptibility ...
Women: A tagging-SNP haplotype analysis Received for publication 19 September 2006 and accepted in revised form 27 February 2007. Lu Qi1,3, Sliding window analyses of the associations between ADIPOR2 haplotypes (possessing 2-6 SNPs) ... Get Content Here

Published By Oxford University Press 201. 0.
In the variable-sized sliding-window method, at each initial locus the maximum window size for the haplotype analysis is determined and then a regularized regression method is used for sliding window analyses for AR, ... Document Viewer

Polymorphic Variation In Surfactant Protein B Is Associated ...
Polymorphic variation in surfactant protein B is associated with COPD exacerbations M.G. Foreman*, D.L. DeMeo*,#, C.P. Hersh*,#, The sliding window haplotype analysis assessed adjacent 2-, 3- or 4-loci combinations. Empirical p-values for ... Read Content

Integrated Genetic And Epigenetic Analysis Identifies ...
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTOType 2 Diabetes and Obesity Linear Regression for Methylation with respect to Genotype for 60 Window. Linear regression p-values (-log 10) for a sliding window of 60 BATMAN windows across the ... Visit Document

PAX6Haplotypes Are Associated With High Myopia In Han Chinese
However, exhaustive sliding-window haplotype analysis highlighted an important role for rs12421026 because haplotypes containing this SNP were found to be associated with high myopia. The most significant results were given by the 4-SNP ... View Document

Association Of TRPV4 Gene Polymorphisms With Chronic ...
We performed adjacent three-SNP sliding window haplotype analysis for the COPD binary phenotype. Table 4 shows the significant results of haplotype-based association analysis in 2054 Human Molecular Genetics, 2009, Vol. 18, No. 11. the two populations. ... Retrieve Doc

Haplo2Ped: A Tool Using Haplotypes As Markers For Linkage ...
Haplo2Ped: a tool using haplotypes as markers Figure 2 The nuclear trios division and haplotype sharing analysis.(A) The family is divided into three nuclear trios (father, F; mother, M; the sliding window process moves out of the area show- ... Content Retrieval

Single Nucleotide Polymorphisms Near The Microsatellite Are ...
Table 2 Results of sliding window analysis using omnibus test (test of overall haplotype frequency) and the haplotype-specific analysis. SNP combinationa ... Return Doc

Identified Single-nucleotide Polymorphisms And Haplotypes At ...
Potential susceptibility regions for DN were selected to perform haplotype analysis. In haplotype-based association analysis, the sliding window approach was adopted to de- ... Read Document

The Association Of Haplotype At The Lumican Gene With High ...
Type analysis, adjusted logistic regression, and multifactor dimensionality reduction (MDR) methods were used to determine significant associations. Sliding window haplotype analyses revealed that the block consisting of rs3759223 and rs3741834 showed ... Get Doc

Epigenetics Of Diabetes Type 2 - Wikipedia, The Free Encyclopedia
A subset of miRNAs has been shown to be involved in metabolic regulation of glucose homeostasis and in epigenetics of diabetes type 2. it was shown to have increased methylation levels in a haplotype associated with Type 2 one group of researchers performed a sliding window analysis. ... Read Article

RESEARCH ARTICLE Open Access Genetic Association Between ...
Exhaustive variable-sized sliding-window haplotype analysis identified 184 haplotypes showing significant differences (P<0.05) in frequencies between patients and controls even after multiple-testing correction. ... Read Document

Linkage Disequilibrium And haplotype analysis Of Two Italian ...
Linkage disequilibrium and haplotype analysis of two Italian Holstein BTA6 regions using 50K and 800K – Reconstructing haplotypes over sliding windows of marker pairs on the 50K SNP panel – Identify the most frequent haplotype in each sliding window ... Return Doc

Transforming Factor-f/Bone Morphogenetic Protein Pathway
In the Transforming Growth Factor-f/Bone Morphogenetic Protein Pathway with Bacteremia sliding window method of 2-SNPs, BMP6 and IGFIR, haplotype analysis for each gene was per- formed ... View Doc

Talk:Palestinians/Archive 12 - Wikipedia, The Free Encyclopedia
The objections, in short, remain rather superfluous. I also concur with Eleland's analysis of the sources. They are very outdated and do not come from experts in the relevant fields. Tiamut 23:24, 13 December 2007 (UTC) "Outdated"? ... Read Article

Poster Presentations: P2 P471
Sliding-window haplotype analysis to identify candidate haplotypes that may harbor risk variants. Results: Mean age of the participants was 49.6 + 6.7 years; 74.4% were female. Ab40 levels increased with age (r¼0.162), while Ab42 and the ratio of Ab42/Ab40 levels decreased with ... Read Here

TCF7L2 Is Not A Major Susceptibility Gene For Type 2 Diabetes ...
A sliding window analysis using a 4 SNP window was used for haplotype analysis. This approach provides 16 different windows from the 19 SNPs. The MLINK program (20) was used to assign a probability of carriage of a given haplotype as described ... Access This Document

SHARE: An Adaptive Algorithm To Select The Most Informative ...
To this end, a sliding window approach was proposed in the hierarchical clustering algorithm called CLADHC (Durrant and others, 2004), if we restrict the haplotype analysis to A, D, and E, haplotype 100 carries an increased disease risk, while all other haplotypes do not. ... Get Document